Research Articles
Correcting GC Bias in Transcriptomics: A Comprehensive Guide for Accurate RNA-Seq Analysis
GC bias, the dependence of sequencing read coverage on guanine-cytosine content, is a major technical artifact that confounds transcriptomics analysis, leading to inaccurate gene expression quantification and differential expression results.
Optimizing RNA Integrity for Sequencing: A Comprehensive Guide from Sample to Data
This article provides a complete framework for researchers and drug development professionals to optimize RNA integrity for sequencing applications.
A Researcher's Guide to Troubleshooting Poor RNA-seq Data Quality: From QC to Advanced Optimization
This guide provides a comprehensive framework for researchers and drug development professionals to diagnose, troubleshoot, and resolve common and complex issues in RNA-seq data.
A Comprehensive Guide to Outlier Detection in RNA-Seq Analysis: Methods, Tools, and Best Practices
Outlier detection in RNA-Seq data is a critical quality control and discovery step for researchers in genomics and drug development.
Integrating Multi-Omics Datasets: A Comprehensive Guide from Foundational Principles to Advanced Clinical Applications
This article provides a comprehensive roadmap for researchers and drug development professionals navigating the complex landscape of multi-omics data integration.
Dimensionality Reduction for Transcriptomics: A Practical Guide from Foundations to Clinical Applications
This article provides a comprehensive guide to dimensionality reduction (DR) techniques for researchers and professionals analyzing high-dimensional transcriptomic data.
Navigating the Void: A Comprehensive Guide to Handling Missing Values in Transcriptomics Data
Missing data is an inevitable challenge in transcriptomics, affecting downstream analyses from biomarker discovery to clinical prediction.
Single-Cell RNA-Seq Quality Control: Essential Covariates, Best Practices, and Advanced Applications
This article provides a comprehensive guide to quality control (QC) for single-cell RNA-sequencing data, tailored for researchers and bioinformaticians.
A Comprehensive Guide to RNA-seq Exploratory Analysis with DESeq2: From Raw Data to Biological Insight
This article provides a complete workflow for performing gene-level exploratory and differential expression analysis of RNA-seq data using the DESeq2 package in R/Bioconductor.
Batch Effect Correction for RNA-seq: A 2025 Guide for Robust Genomic Analysis
This article provides a comprehensive guide for researchers and drug development professionals on managing batch effects in RNA-seq data analysis.